Since I am an idiot - I totally messed up my toilet soil pipe system when I thought I had to raise it up to get the drain to sit on top of my new tile in my bathroom. Well, rookie mistake. I totally screwed up the existing drain system, and had to cut it out and completely replace it. However, I'd say the patch job was pretty good considering I really had no idea what I was doing.
Mad props to Phil who was able to explain this whole process over the phone to me, again, I could not have done it without him. Thanks!